If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ), 'gf_id' => 'HOM05D000723', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000723' ), 'data_identifier' => 'HOM05D000723', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000723', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '800', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p06900' => 'bna', 'A03p22150' => 'bna', 'A04p04640' => 'bna', 'A04p04670' => 'bna', 'A04p30440' => 'bna', 'A05p06920' => 'bna', 'A06p30980' => 'bna', 'A09p08620' => 'bna', 'A09p48190' => 'bna', 'A09p57560' => 'bna', 'Aa31LG10G10180' => 'aar', 'Aa31LG10G9770' => 'aar', 'Aa31LG1G17600' => 'aar', 'Aa31LG4G15280' => 'aar', 'Aa31LG5G20130' => 'aar', 'Aa31LG7G14370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1052' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4459' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4300' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.986' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.990' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.108' => 'aag', 'Actinidia01861' => 'ach', 'Actinidia02976' => 'ach', 'Actinidia03778' => 'ach', 'Actinidia04407' => 'ach', 'Actinidia06537' => 'ach', 'Actinidia13859' => 'ach', 'Actinidia19755' => 'ach', 'Actinidia28040' => 'ach', 'Actinidia29208' => 'ach', 'Actinidia33853' => 'ach', 'Ah.01g001780' => 'amhyb', 'Ah.01g010060' => 'amhyb', 'Ah.01g017480' => 'amhyb', 'Ah.01g017490' => 'amhyb', 'Ah.01g017520' => 'amhyb', 'Ah.01g017530' => 'amhyb', 'Ah.08g214860' => 'amhyb', 'Ah.10g033210' => 'amhyb', 'AL463U10020' => 'aly', 'AL4G11950' => 'aly', 'AL4G36850' => 'aly', 'AL5G36420' => 'aly', 'AL8G36270' => 'aly', 'AL8G41660' => 'aly', 'Aqoxy2G00223' => 'aox', 'Aqoxy2G01998' => 'aox', 'Aqoxy4G03029' => 'aox', 'Aqoxy4G03033' => 'aox', 'Aqoxy6G00710' => 'aox', 'arahy.Tifrunner.gnm1.ann1.004J0D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4NAC8Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.55G5GW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8W58Q9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3QRPX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0VFWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J66FTP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JFN0DY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JUMH57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W47UXZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XT452W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3PHS2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZH0CHD' => 'arhy', 'AT2G22450' => 'ath', 'AT2G39460' => 'ath', 'AT3G55280' => 'ath', 'AT5G59750' => 'ath', 'AT5G64300' => 'ath', 'ATR0033G041' => 'atr', 'ATR0618G166' => 'atr', 'ATR0661G337' => 'atr', 'ATR0684G010' => 'atr', 'Atru.chr12.542' => 'acertr', 'Atru.chr3.1342' => 'acertr', 'Atru.chr3.3811' => 'acertr', 'Atru.chr3.3812' => 'acertr', 'Atru.chr6.1216' => 'acertr', 'AUR62001843' => 'cqu', 'AUR62003839' => 'cqu', 'AUR62004257' => 'cqu', 'AUR62009631' => 'cqu', 'AUR62010128' => 'cqu', 'AUR62010165' => 'cqu', 'AUR62013165' => 'cqu', 'AUR62015098' => 'cqu', 'AUR62015161' => 'cqu', 'AUR62017559' => 'cqu', 'AUR62017613' => 'cqu', 'AUR62018572' => 'cqu', 'AUR62020844' => 'cqu', 'AUR62042746' => 'cqu', 'BcaB01g00116' => 'bca', 'BcaB02g07693' => 'bca', 'BcaB02g08433' => 'bca', 'BcaB02g09117' => 'bca', 'BcaB04g19966' => 'bca', 'BcaB05g22573' => 'bca', 'BcaB06g29088' => 'bca', 'BcaB07g32903' => 'bca', 'BcaB08g35068' => 'bca', 'BcaC02g07402' => 'bca', 'BcaC02g08656' => 'bca', 'BcaC02g09741' => 'bca', 'BcaC02g12076' => 'bca', 'BcaC07g39846' => 'bca', 'BcaC07g41069' => 'bca', 'BolC2t07322H' => 'bol', 'BolC3t15006H' => 'bol', 'BolC3t18457H' => 'bol', 'BolC4t22429H' => 'bol', 'BolC4t25279H' => 'bol', 'BolC4t28231H' => 'bol', 'BolC4t28234H' => 'bol', 'BolC6t37455H' => 'bol', 'BolC8t50668H' => 'bol', 'BolC8t51635H' => 'bol', 'BolC9t53884H' => 'bol', 'BraA02t05771Z' => 'bra', 'BraA03t11446Z' => 'bra', 'BraA04t16176Z' => 'bra', 'BraA04t16179Z' => 'bra', 'BraA04t18464Z' => 'bra', 'BraA05t19657Z' => 'bra', 'BraA06t26040Z' => 'bra', 'BraA09t36511Z' => 'bra', 'BraA09t40275Z' => 'bra', 'BraA09t41147Z' => 'bra', 'C02p12200' => 'bna', 'C03p26220' => 'bna', 'C03p61980' => 'bna', 'C04p08190' => 'bna', 'C04p37070' => 'bna', 'C04p67360' => 'bna', 'C04p67370' => 'bna', 'C08p30470' => 'bna', 'C08p40700' => 'bna', 'C09p09730' => 'bna', 'CAN.G1343.6' => 'can', 'CAN.G3185.1' => 'can', 'CAN.G501.9' => 'can', 'CAN.G523.39' => 'can', 'CAN.G820.10' => 'can', 'CAN.G939.7' => 'can', 'CANSAT11G2651' => 'cansat', 'CANSAT54G2051' => 'cansat', 'CANSAT54G2430' => 'cansat', 'CANSAT56G2241' => 'cansat', 'CANSAT80G1735' => 'cansat', 'CARHR031910' => 'chi', 'CARHR113630' => 'chi', 'CARHR134330' => 'chi', 'CARHR165280' => 'chi', 'CARHR273330' => 'chi', 'CARHR278230' => 'chi', 'Carub.0004s0161' => 'cru', 'Carub.0004s2153' => 'cru', 'Carub.0005s2194' => 'cru', 'Carub.0007s0258' => 'cru', 'Carub.0008s2040' => 'cru', 'Carub.0008s2509' => 'cru', 'Ca_00148_v3' => 'car', 'Ca_01348_v3' => 'car', 'Ca_01351_v3' => 'car', 'Ca_07201_v3' => 'car', 'Ca_18367_v3' => 'car', 'Ca_19196_v3' => 'car', 'Ca_27690_v3' => 'car', 'Ca_31101_v3' => 'car', 'CBR_g3995' => 'cbr', 'CBR_g40359' => 'cbr', 'CBR_g84841' => 'cbr', 'Cc00_g07870' => 'ccan', 'Cc00_g13370' => 'ccan', 'Cc00_g22170' => 'ccan', 'Cc00_g23840' => 'ccan', 'Cc01_g01290' => 'ccan', 'Cc01_g12240' => 'ccan', 'Cc02_g08400' => 'ccan', 'Cc02_g21160' => 'ccan', 'Cc05_g02660' => 'ccan', 'Cc06_g21310' => 'ccan', 'Cc07_g07340' => 'ccan', 'Cc07_g14550' => 'ccan', 'Cc10_g11680' => 'ccan', 'Cc11_g02500' => 'ccan', 'CDE02G3837' => 'cde', 'CDE03G0373' => 'cde', 'CDE06G1453' => 'cde', 'CDE09G0727' => 'cde', 'CDE09G0734' => 'cde', 'CDE10G0588' => 'cde', 'Cfa005680' => 'cfa', 'Cfa011441' => 'cfa', 'Ciclev10025787m.g' => 'ccl', 'Ciclev10028107m.g' => 'ccl', 'Ciclev10028220m.g' => 'ccl', 'Ciclev10029426m.g' => 'ccl', 'Ciclev10032980m.g' => 'ccl', 'CiPaw.01G282300' => 'cil', 'CiPaw.02G180600' => 'cil', 'CiPaw.03G146100' => 'cil', 'CiPaw.05G032500' => 'cil', 'CiPaw.06G155800' => 'cil', 'CiPaw.13G099900' => 'cil', 'CiPaw.13G100000' => 'cil', 'CiPaw.14G072800' => 'cil', 'ClCG07G003080' => 'cla', 'ClCG08G005020' => 'cla', 'ClCG09G020220' => 'cla', 'ClCG10G009370' => 'cla', 'ClCG10G009380' => 'cla', 'ClCG11G000840' => 'cla', 'COL.COLO4_14892' => 'col', 'COL.COLO4_18438' => 'col', 'COL.COLO4_18439' => 'col', 'COL.COLO4_27298' => 'col', 'COL.COLO4_32319' => 'col', 'Cpa.g.sc1.344' => 'cpa', 'Cpa.g.sc252.19' => 'cpa', 'Cpa.g.sc252.20' => 'cpa', 'Cpa.g.sc42.25' => 'cpa', 'Cpa.g.sc55.69' => 'cpa', 'Cre06.g282500' => 'cre', 'Cre09.g393900' => 'cre', 'Cre14.g620350' => 'cre', 'CsaV3_4G009570' => 'csa', 'CsaV3_4G009580' => 'csa', 'CsaV3_5G006850' => 'csa', 'CsaV3_5G012620' => 'csa', 'CsaV3_5G012820' => 'csa', 'CsaV3_5G026230' => 'csa', 'CsaV3_6G003290' => 'csa', 'CSS0005330' => 'camsi', 'CSS0006156' => 'camsi', 'CSS0006630' => 'camsi', 'CSS0009365' => 'camsi', 'CSS0012179' => 'camsi', 'CSS0014798' => 'camsi', 'CSS0019141' => 'camsi', 'CSS0029108' => 'camsi', 'CSS0029754' => 'camsi', 'CSS0032825' => 'camsi', 'CSS0033218' => 'camsi', 'CSS0042486' => 'camsi', 'CSS0046133' => 'camsi', 'DCAR_001770' => 'dca', 'DCAR_015598' => 'dca', 'DCAR_017890' => 'dca', 'DCAR_021879' => 'dca', 'DCAR_025822' => 'dca', 'DCAR_029193' => 'dca', 'DCAR_031568' => 'dca', 'Dinv08865' => 'din', 'Dinv09004' => 'din', 'Dinv24168' => 'din', 'Dinv25970' => 'din', 'Dinv26275' => 'din', 'Dinv31416' => 'din', 'Dinv35649' => 'din', 'Duzib128G1935' => 'dzi', 'Duzib132G1097' => 'dzi', 'Duzib147G1011' => 'dzi', 'Duzib150G0358' => 'dzi', 'Duzib168G0120' => 'dzi', 'Duzib168G1122' => 'dzi', 'Duzib170G0008' => 'dzi', 'Duzib187G0349' => 'dzi', 'Duzib248G1074' => 'dzi', 'ECA232G2065' => 'eca', 'ECA234G3830' => 'eca', 'ECA234G4601' => 'eca', 'ECA238G3367' => 'eca', 'ECA246G0216' => 'eca', 'ECA248G2818' => 'eca', 'EL10Ac2g03453' => 'bvu', 'EL10Ac4g08131' => 'bvu', 'EL10Ac7g15958' => 'bvu', 'EL10Ac7g17303' => 'bvu', 'EL10Ac9g21522' => 'bvu', 'EL10Ac9g22780' => 'bvu', 'EL10Ac9g22865' => 'bvu', 'Eucgr.G00874' => 'egr', 'Eucgr.G00876' => 'egr', 'Eucgr.G02902' => 'egr', 'Eucgr.H04741' => 'egr', 'Eucgr.J02077' => 'egr', 'Eucgr.L03160' => 'egr', 'FAN01G0122' => 'fan', 'FAN01G2522' => 'fan', 'FAN01G2903' => 'fan', 'FAN03G2772' => 'fan', 'FAN06G0351' => 'fan', 'FAN06G0702' => 'fan', 'FAN10G2057' => 'fan', 'FAN11G1931' => 'fan', 'FAN16G0029' => 'fan', 'FAN16G0126' => 'fan', 'FAN21G2669' => 'fan', 'FAN23G1195' => 'fan', 'FAN25G0280' => 'fan', 'FAN25G1446' => 'fan', 'FAN28G1329' => 'fan', 'FvH4_1g20220' => 'fve', 'FvH4_3g34860' => 'fve', 'FvH4_3g34890' => 'fve', 'FvH4_7g21380' => 'fve', 'FvH4_7g21570' => 'fve', 'Glyma.02G095000' => 'gma', 'Glyma.05G175500' => 'gma', 'Glyma.08G070400' => 'gma', 'Glyma.08G132700' => 'gma', 'Glyma.08G177300' => 'gma', 'Glyma.11G143400' => 'gma', 'Glyma.12G066700' => 'gma', 'Glyma.13G042600' => 'gma', 'Glyma.13G332567' => 'gma', 'Glyma.13G332633' => 'gma', 'Glyma.13G332700' => 'gma', 'Glyma.15G041500' => 'gma', 'Glyma.15G041600' => 'gma', 'Glyma.15G055700' => 'gma', 'Glyma.18G286400' => 'gma', 'Gohir.A03G038200' => 'ghi', 'Gohir.A03G038300' => 'ghi', 'Gohir.A03G175500' => 'ghi', 'Gohir.A04G114600' => 'ghi', 'Gohir.A05G098100' => 'ghi', 'Gohir.A07G095500' => 'ghi', 'Gohir.A08G000161' => 'ghi', 'Gohir.A10G087001' => 'ghi', 'Gohir.A10G213000' => 'ghi', 'Gohir.D02G199200' => 'ghi', 'Gohir.D03G130100' => 'ghi', 'Gohir.D03G130200' => 'ghi', 'Gohir.D04G156000' => 'ghi', 'Gohir.D05G098200' => 'ghi', 'Gohir.D07G099800' => 'ghi', 'Gohir.D08G010500' => 'ghi', 'Gohir.D10G101551' => 'ghi', 'Gohir.D10G220900' => 'ghi', 'Gohir.D13G234800' => 'ghi', 'Gorai.001G107600' => 'gra', 'Gorai.003G136800' => 'gra', 'Gorai.003G136900' => 'gra', 'Gorai.004G003800' => 'gra', 'Gorai.005G223700' => 'gra', 'Gorai.009G101800' => 'gra', 'Gorai.011G111400' => 'gra', 'Gorai.011G249300' => 'gra', 'Gorai.012G143000' => 'gra', 'GSVIVG01003433001' => 'vvi', 'GSVIVG01015676001' => 'vvi', 'GSVIVG01025041001' => 'vvi', 'GSVIVG01025042001' => 'vvi', 'GSVIVG01025606001' => 'vvi', 'HanXRQChr01g0009921' => 'han', 'HanXRQChr07g0200701' => 'han', 'HanXRQChr08g0220201' => 'han', 'HanXRQChr10g0291031' => 'han', 'HanXRQChr10g0303591' => 'han', 'HanXRQChr10g0303601' => 'han', 'HanXRQChr11g0323511' => 'han', 'HanXRQChr12g0370591' => 'han', 'HanXRQChr14g0457691' => 'han', 'HanXRQChr16g0514351' => 'han', 'Haze_10570' => 'cav', 'Haze_17011' => 'cav', 'Haze_24024' => 'cav', 'Haze_24025' => 'cav', 'Haze_24823' => 'cav', 'Haze_26523' => 'cav', 'Haze_27531' => 'cav', 'Hma1.2p1_0035F.1_g021990' => 'hma', 'Hma1.2p1_0035F.1_g022030' => 'hma', 'Hma1.2p1_0727F.1_g209090' => 'hma', 'Hma1.2p1_0784F.1_g217200' => 'hma', 'HPP92_004273' => 'vpl', 'HPP92_005986' => 'vpl', 'HPP92_007303' => 'vpl', 'Hund00076' => 'sun', 'Hund01559' => 'sun', 'Hund05008' => 'sun', 'Hund05009' => 'sun', 'Hund06368' => 'sun', 'Hund08337' => 'sun', 'Hund20004' => 'sun', 'Hund22408' => 'sun', 'Lalb_Chr01g0003841' => 'lal', 'Lalb_Chr03g0026891' => 'lal', 'Lalb_Chr05g0217611' => 'lal', 'Lalb_Chr14g0374971' => 'lal', 'Lalb_Chr14g0374981' => 'lal', 'Lalb_Chr19g0137661' => 'lal', 'Lalb_Chr20g0122831' => 'lal', 'Lalb_Chr20g0122841' => 'lal', 'Lj1A161T64' => 'lonja', 'Lj1A932T35' => 'lonja', 'Lj1C932T5' => 'lonja', 'Lj1g0015633' => 'lja', 'Lj3C972T7' => 'lonja', 'Lj3g0006185' => 'lja', 'Lj3g0013675' => 'lja', 'Lj3g0025616' => 'lja', 'Lj4g0010797' => 'lja', 'Lj5A234T85' => 'lonja', 'Lj6g0004108' => 'lja', 'Lj7P112T24' => 'lonja', 'Lj8P604T19' => 'lonja', 'Lsat_1_v5_gn_2_115940' => 'lsa', 'Lsat_1_v5_gn_3_42901' => 'lsa', 'Lsat_1_v5_gn_4_159781' => 'lsa', 'Lsat_1_v5_gn_5_108740' => 'lsa', 'Lsat_1_v5_gn_5_166481' => 'lsa', 'Lsat_1_v5_gn_8_16880' => 'lsa', 'Lsat_1_v5_gn_9_115140' => 'lsa', 'Lsat_1_v5_gn_9_116761' => 'lsa', 'Manes.04G030100' => 'mes', 'Manes.07G035400' => 'mes', 'Manes.07G111000' => 'mes', 'Manes.11G134900' => 'mes', 'Manes.11G135000' => 'mes', 'Manes.12G129700' => 'mes', 'Manes.13G097101' => 'mes', 'Mapoly0028s0094' => 'mpo', 'Mapoly0045s0105' => 'mpo', 'MBI02_g10711_MAGBIO' => 'mbi', 'MBI05_g08789_MAGBIO' => 'mbi', 'MBI06_g22314_MAGBIO' => 'mbi', 'MBI12_g19409_MAGBIO' => 'mbi', 'MBI14_g02807_MAGBIO' => 'mbi', 'MBI18_g14728_MAGBIO' => 'mbi', 'MCO09G658' => 'mco', 'MCO14G186' => 'mco', 'MCO16G547' => 'mco', 'MD01G1036500' => 'mdo', 'MD01G1121200' => 'mdo', 'MD03G1100500' => 'mdo', 'MD03G1100600' => 'mdo', 'MD07G1190800' => 'mdo', 'MD11G1114700' => 'mdo', 'Medtr2g009270' => 'mtr', 'Medtr2g096330' => 'mtr', 'Medtr2g096340' => 'mtr', 'Medtr4g007840' => 'mtr', 'Medtr4g063060' => 'mtr', 'Medtr4g094130' => 'mtr', 'Medtr7g023260' => 'mtr', 'MELO3C011536.2' => 'cme', 'MELO3C022601.2' => 'cme', 'MELO3C023835.2' => 'cme', 'MELO3C024826.2' => 'cme', 'MELO3C024827.2' => 'cme', 'MELO3C025474.2' => 'cme', 'Migut.B00579' => 'egut', 'Migut.D02136' => 'egut', 'Migut.G00754' => 'egut', 'Migut.J00374' => 'egut', 'Migut.J00995' => 'egut', 'Migut.L00426' => 'egut', 'Migut.N01084' => 'egut', 'MSTRG.10275' => 'ama', 'MSTRG.16602' => 'ama', 'MSTRG.18598' => 'ama', 'MSTRG.19111' => 'ama', 'MSTRG.26751' => 'ama', 'MSTRG.4239' => 'ama', 'Nitab4.5_0000142g0380' => 'nta', 'Nitab4.5_0000216g0020' => 'nta', 'Nitab4.5_0000241g0140' => 'nta', 'Nitab4.5_0000349g0100' => 'nta', 'Nitab4.5_0000464g0010' => 'nta', 'Nitab4.5_0000527g0070' => 'nta', 'Nitab4.5_0000610g0240' => 'nta', 'Nitab4.5_0000787g0040' => 'nta', 'Nitab4.5_0000863g0060' => 'nta', 'Nitab4.5_0001072g0030' => 'nta', 'Nitab4.5_0001072g0040' => 'nta', 'Nitab4.5_0002995g0050' => 'nta', 'Nitab4.5_0003179g0100' => 'nta', 'Nitab4.5_0003959g0030' => 'nta', 'Nitab4.5_0004238g0020' => 'nta', 'Nitab4.5_0004851g0040' => 'nta', 'Nitab4.5_0008985g0010' => 'nta', 'Nitab4.5_0009412g0020' => 'nta', 'Nn1g03903' => 'nnu', 'Nn1g05464' => 'nnu', 'Nn2g12878' => 'nnu', 'Nn2g12880' => 'nnu', 'Nn4g24499' => 'nnu', 'Nn4g26032' => 'nnu', 'Nn5g29995' => 'nnu', 'Nn8g40292' => 'nnu', 'Oeu007986.1' => 'oeu', 'Oeu010543.1' => 'oeu', 'Oeu010974.1' => 'oeu', 'Oeu022080.1' => 'oeu', 'Oeu023559.1' => 'oeu', 'Oeu025636.1' => 'oeu', 'Oeu040716.1' => 'oeu', 'Oeu041010.1' => 'oeu', 'Oeu049196.1' => 'oeu', 'Oeu062317.1' => 'oeu', 'Os01g0348700' => 'osa', 'Os02g0572400' => 'osa', 'Os04g0501000' => 'osa', 'Os05g0460600' => 'osa', 'Os08g0481950' => 'osa', 'Peaxi162Scf00015g01919' => 'pax', 'Peaxi162Scf00039g00913' => 'pax', 'Peaxi162Scf00060g00433' => 'pax', 'Peaxi162Scf00237g01412' => 'pax', 'Peaxi162Scf00299g01141' => 'pax', 'Peaxi162Scf00406g00011' => 'pax', 'Peaxi162Scf00548g00018' => 'pax', 'Peaxi162Scf00604g00036' => 'pax', 'PGR042G2777' => 'pgr', 'PGR044G0611' => 'pgr', 'PGR102G0129' => 'pgr', 'PGR119G0510' => 'pgr', 'PGR119G2406' => 'pgr', 'PGR142G0236' => 'pgr', 'PGSC0003DMG400012571' => 'stu', 'PGSC0003DMG400015538' => 'stu', 'PGSC0003DMG400016219' => 'stu', 'PGSC0003DMG400019215' => 'stu', 'PGSC0003DMG400021405' => 'stu', 'PGSC0003DMG400023925' => 'stu', 'PGSC0003DMG400040332' => 'stu', 'PGSC0003DMG400044519' => 'stu', 'Phvul.002G210900' => 'pvu', 'Phvul.002G260600' => 'pvu', 'Phvul.006G045100' => 'pvu', 'Phvul.006G204200' => 'pvu', 'Phvul.008G015200' => 'pvu', 'Phvul.011G067600' => 'pvu', 'Phvul.L002143' => 'pvu', 'Phvul.L002243' => 'pvu', 'Potri.001G234900' => 'ptr', 'Potri.001G310500' => 'ptr', 'Potri.005G071600' => 'ptr', 'Potri.006G213300' => 'ptr', 'Potri.007G097300' => 'ptr', 'Potri.008G050200' => 'ptr', 'Potri.009G027000' => 'ptr', 'Potri.010G210300' => 'ptr', 'Potri.016G079800' => 'ptr', 'Potri.017G050400' => 'ptr', 'Pp3c12_19360' => 'ppa', 'Pp3c13_15920' => 'ppa', 'Pp3c1_12610' => 'ppa', 'Pp3c1_15090' => 'ppa', 'Pp3c2_21980' => 'ppa', 'Pp3c3_21160' => 'ppa', 'Pp3c4_8620' => 'ppa', 'Pp3s30_1010' => 'ppa', 'PRCOL_00000914' => 'pco', 'PRCOL_00003340' => 'pco', 'PRCOL_00003476' => 'pco', 'PRCOL_00007036' => 'pco', 'Prupe.2G228900' => 'ppe', 'Prupe.6G085500' => 'ppe', 'Prupe.6G085600' => 'ppe', 'Prupe.6G193700' => 'ppe', 'Prupe.8G065300' => 'ppe', 'Psat0s3072g0040' => 'psa', 'Psat0s3393g0160' => 'psa', 'Psat1g035520' => 'psa', 'Psat1g215720' => 'psa', 'Psat2g075240' => 'psa', 'Psat3g049280' => 'psa', 'Psat5g282600' => 'psa', 'Psat5g282640' => 'psa', 'Psat6g158360' => 'psa', 'Psat6g169360' => 'psa', 'Psat7g104320' => 'psa', 'Psat7g219400' => 'psa', 'PSO063G1023' => 'pso', 'PSO063G1395' => 'pso', 'PSO063G4540' => 'pso', 'PSO170G1013' => 'pso', 'PSO170G2690' => 'pso', 'PSO206G0040' => 'pso', 'PSO210G4752' => 'pso', 'PSO210G5732' => 'pso', 'PSO210G7590' => 'pso', 'PSO302G0235' => 'pso', 'PSO339G0286' => 'pso', 'PSO339G3391' => 'pso', 'PSO339G4845' => 'pso', 'PSO339G6085' => 'pso', 'PSO384G0108' => 'pso', 'PSO443G0056' => 'pso', 'PSO447G0200' => 'pso', 'PSO447G0291' => 'pso', 'PSO447G0387' => 'pso', 'PSO478G2514' => 'pso', 'PSO478G3161' => 'pso', 'PSO478G3320' => 'pso', 'PSO478G3991' => 'pso', 'PSO478G4769' => 'pso', 'PSO500G0223' => 'pso', 'PSO541G2323' => 'pso', 'PSO541G6430' => 'pso', 'PSO674G0025' => 'pso', 'PSO675G1633' => 'pso', 'PSO675G1666' => 'pso', 'PSO675G7724' => 'pso', 'PSO675G8752' => 'pso', 'PSO675G9391' => 'pso', 'PSO724G0928' => 'pso', 'PSO732G0667' => 'pso', 'PSO761G0374' => 'pso', 'PSO782G0791' => 'pso', 'PSO782G4086' => 'pso', 'PSO832G4180' => 'pso', 'QL01p033503' => 'qlo', 'QL01p033511' => 'qlo', 'QL06p048003' => 'qlo', 'QL08p058660' => 'qlo', 'QL11p023181' => 'qlo', 'RcHm_v2.0_Chr1g0365741' => 'rch', 'RcHm_v2.0_Chr2g0112291' => 'rch', 'RcHm_v2.0_Chr3g0495131' => 'rch', 'RcHm_v2.0_Chr5g0062711' => 'rch', 'RcHm_v2.0_Chr5g0062761' => 'rch', 'Rhsim01G0224400' => 'rsi', 'Rhsim04G0153200' => 'rsi', 'Rhsim05G0103300' => 'rsi', 'Rhsim09G0163400' => 'rsi', 'Rhsim10G0167900' => 'rsi', 'Sabra05G0058600' => 'sbr', 'Sabra06G0164300' => 'sbr', 'Sabra07G0080500' => 'sbr', 'Sabra08G0035900' => 'sbr', 'Sabra09G0018100' => 'sbr', 'Sabra10G0162600' => 'sbr', 'Sabra16G0141100' => 'sbr', 'Sabra16G0141200' => 'sbr', 'Sabra16G0196200' => 'sbr', 'Sabra17G0037100' => 'sbr', 'Sabra17G0042400' => 'sbr', 'SalBow1G2017' => 'sbo', 'SalBow1G3141' => 'sbo', 'SalBow3G0522' => 'sbo', 'SalBow3G1370' => 'sbo', 'SalBow3G1629' => 'sbo', 'SalBow4G2043' => 'sbo', 'SalBow5G5457' => 'sbo', 'SalBow6G5011' => 'sbo', 'SalBow6G5851' => 'sbo', 'SalBow7G0884' => 'sbo', 'SalBow7G1634' => 'sbo', 'SalBow7G1675' => 'sbo', 'SalBow7G2396' => 'sbo', 'SalBow7G2959' => 'sbo', 'SalBow7G3117' => 'sbo', 'SalBow7G4272' => 'sbo', 'SalBow8G1326' => 'sbo', 'Sc01g0003860' => 'sci', 'Sc01g0003880' => 'sci', 'Sc06g0007550' => 'sci', 'Sc08g0003680' => 'sci', 'Sc16g0000290' => 'sci', 'Sc16g0000300' => 'sci', 'Sc20g0002490' => 'sci', 'Sc20g0004410' => 'sci', 'Sc21g0005430' => 'sci', 'Sc21g0005440' => 'sci', 'Sed0001501' => 'sed', 'Sed0005653' => 'sed', 'Sed0006439' => 'sed', 'Sed0008266' => 'sed', 'Sed0011435' => 'sed', 'Sed0014304' => 'sed', 'Sed0018892' => 'sed', 'Sed0022443' => 'sed', 'Sed0023494' => 'sed', 'Sed0026427' => 'sed', 'Sed0026872' => 'sed', 'SEGI_04201' => 'sgi', 'SEGI_10217' => 'sgi', 'SEGI_20136' => 'sgi', 'SEGI_24235' => 'sgi', 'SEGI_24926' => 'sgi', 'SEGI_27919' => 'sgi', 'SEGI_30726' => 'sgi', 'SEGI_39653' => 'sgi', 'SGA_v2.0_scaffold134G34715' => 'sas', 'SGA_v2.0_scaffold14G07140' => 'sas', 'SGA_v2.0_scaffold1G00127' => 'sas', 'SGA_v2.0_scaffold219G42576' => 'sas', 'SGA_v2.0_scaffold35G14205' => 'sas', 'SGA_v2.0_scaffold75G24920' => 'sas', 'SGA_v2.0_scaffold94G28626' => 'sas', 'SHI04977' => 'shi', 'SHI05980' => 'shi', 'SMO169G0127' => 'smo', 'SMO228G0101' => 'smo', 'SMO364G0807' => 'smo', 'SMO367G0777' => 'smo', 'Solyc01g105560.3' => 'sly', 'Solyc02g092080.2' => 'sly', 'Solyc09g005720.3' => 'sly', 'Solyc10g084610.3' => 'sly', 'Solyc10g086330.2' => 'sly', 'Solyc11g010300.2' => 'sly', 'Solyc11g073160.3' => 'sly', 'Sopen01g048020' => 'spe', 'Sopen02g036660' => 'spe', 'Sopen09g001610' => 'spe', 'Sopen10g034050' => 'spe', 'Sopen10g035710' => 'spe', 'Sopen11g005080' => 'spe', 'Sopen11g030800' => 'spe', 'Sp2g27360' => 'spa', 'Sp4g01460' => 'spa', 'Sp4g21760' => 'spa', 'Sp5g07180' => 'spa', 'Sp6g21420' => 'spa', 'TAR369G0479' => 'tar', 'TAR376G0486' => 'tar', 'TAR381G0921' => 'tar', 'TAR381G1398' => 'tar', 'TAR623G0388' => 'tar', 'TAR623G0960' => 'tar', 'TAR626G1103' => 'tar', 'TAR628G1235' => 'tar', 'TAR633G0699' => 'tar', 'TAR633G1655' => 'tar', 'TAR636G3571' => 'tar', 'THA.LOC104806490' => 'tha', 'THA.LOC104806876' => 'tha', 'THA.LOC104807677' => 'tha', 'THA.LOC104810014' => 'tha', 'THA.LOC104810798' => 'tha', 'THA.LOC104810799' => 'tha', 'THA.LOC104818446' => 'tha', 'THA.LOC104824259' => 'tha', 'THA.LOC104824267' => 'tha', 'Thecc.01G095300' => 'tca', 'Thecc.02G133600' => 'tca', 'Thecc.09G328500' => 'tca', 'Thecc.09G328600' => 'tca', 'Thecc.10G056800' => 'tca', 'Thhalv10000152m.g' => 'esa', 'Thhalv10003958m.g' => 'esa', 'Thhalv10010790m.g' => 'esa', 'Thhalv10013308m.g' => 'esa', 'Thhalv10015923m.g' => 'esa', 'Thhalv10017366m.g' => 'esa', 'TPR.G1065' => 'tpr', 'TPR.G15511' => 'tpr', 'TPR.G2833' => 'tpr', 'TPR.G34264' => 'tpr', 'TPR.G34269' => 'tpr', 'TPR.G9490' => 'tpr', 'TWI14G0452' => 'twi', 'TWI15G0015' => 'twi', 'TWI31G1149' => 'twi', 'TWI75G1168' => 'twi', 'TWI77G0013' => 'twi', 'TWI79G0803' => 'twi', 'TWI79G1708' => 'twi', 'unitig_0.g611' => 'ugi', 'unitig_0.g612' => 'ugi', 'unitig_10.g29675' => 'ugi', 'unitig_16.g32858' => 'ugi', 'unitig_22.g5077' => 'ugi', 'unitig_736.g22480' => 'ugi', 'unitig_746.g26583' => 'ugi', 'unitig_8.g3982' => 'ugi', 'unitig_8.g4094' => 'ugi', 'vmacro07145' => 'vma', 'vmacro08676' => 'vma', 'vmacro12988' => 'vma', 'vmacro14503' => 'vma', 'vmacro19947' => 'vma', 'VMungo0251G1338' => 'vmu', 'VMungo0251G3098' => 'vmu', 'VMungo0540G1860' => 'vmu', 'VMungo1080G1270' => 'vmu', 'VMungo1080G1615' => 'vmu', 'VMungo1127G1139' => 'vmu', 'VMungo1383G0041' => 'vmu', 'Zm00001eb033400' => 'zma', 'Zm00001eb078210' => 'zma', 'Zm00001eb182780' => 'zma', 'Zm00001eb196850' => 'zma', 'Zm00001eb223000' => 'zma', 'Zm00001eb244650' => 'zma', 'Zm00001eb245110' => 'zma', 'Zm00001eb276890' => 'zma', 'Zm00001eb281530' => 'zma', 'Zm00001eb281810' => 'zma', 'Zm00001eb351390' => 'zma', 'Zm00001eb413490' => 'zma', 'Zm00001eb416620' => 'zma', 'Zm00001eb416850' => 'zma', 'Zm00001eb425920' => 'zma' ) $gf_id = 'HOM05D000723' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000723' ) $data_identifier = 'HOM05D000723' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 6, 'aag' => (int) 6, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 14, 'bca' => (int) 15, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 14, 'cde' => (int) 6, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 5, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 8, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 6, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 8, 'oeu' => (int) 10, 'osa' => (int) 5, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 12, 'pso' => (int) 39, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 11, 'sbo' => (int) 17, 'sci' => (int) 10, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 7, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425920' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1